rs238762951 SNP Detail

Summary

• ID
  rs238762951
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79489854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGTATTT TCTTAATCAG
  TGATATTAAT GTGATGAGGG TCCAGCCCAT TGTGGGTGTT GCGACCTCTG GGCTGGGTGG
  TCCTGAGTTC TAAAGAAAGC AGGCTGAGCA AGCCAGGAAG AGGAAGCCAG TAAGTAGCAC
  CCCTCCATGA CCTCTGTACC AGCTGCTGTC TCCAGGTTCC AGCTCTGCTT GAGTTCCAGC
  M
  TGACCTCCTT CAGAAGATGG ACAGCTACAT GGAAGCATAA GCCAAATAGG CCCTTTCTTC
  CTCTGTTTGC TTTTGGTCCC CGTGTTTCAT CACAGCAATA GTAACCCTAA CTACAACGGT
  GGTCAAGAGC TCTTCAGGAA GATCTGAGTT CAATTCCCAG CACTCACTGT TTGTAATAGG
  TAATAACTGT TTGTAACTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032918	MGP_WTSI_7_86984992	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238762951					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032918	MGP_WTSI_7_86984992	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79489854 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Tssr67371	transcription start site region 67371	1723 bp upstream
Tssr67372	transcription start site region 67372	1911 bp upstream
Tssr73153	transcription start site region 73153	1786 bp upstream
Tssr73154	transcription start site region 73154	1624 bp upstream
Tssr73155	transcription start site region 73155	1414 bp upstream
Tssr73156	transcription start site region 73156	1350 bp upstream
Tssr73157	transcription start site region 73157	1152 bp upstream
Tssr73158	transcription start site region 73158	902 bp upstream
Tssr73159	transcription start site region 73159	852 bp upstream
Tssr73160	transcription start site region 73160	608 bp upstream
Tssr73161	transcription start site region 73161	797 bp downstream
Tssr73162	transcription start site region 73162	814 bp downstream
Tssr73163	transcription start site region 73163	873 bp downstream
Tssr73164	transcription start site region 73164	1018 bp downstream
Tssr73165	transcription start site region 73165	1579 bp downstream
Tssr73166	transcription start site region 73166	1620 bp downstream
Tssr73167	transcription start site region 73167	1828 bp downstream
Tssr73168	transcription start site region 73168	1840 bp downstream
Tssr73169	transcription start site region 73169	1868 bp downstream
Tssr73170	transcription start site region 73170	1899 bp downstream
Tssr73171	transcription start site region 73171	1970 bp downstream
Tssr73172	transcription start site region 73172	1998 bp downstream