rs238767847 SNP Detail

Summary

• ID
  rs238767847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAGGTAG AGTGTAAAAG
  TTATACAACT TTTACAGTCA TTCCTTTAAT TATGTTATTT TTTAGCTAGC TTTATAAACT
  ATTAATATCT TCTGGTTTAT GGTTAACATA TCAAAAACAT AATTTTAAAG CCATTTTTTA
  AAACTGAACT GAAATTTGTC CTTGAGTAGA AAGCAGGGAA AAATTCTATT CTAAAAAAAC
  Y
  TATAATAGAA TGCTTGCATG TATAATCCAC TTTTCAGTTT GTTTGTACTG CCTTTTCTGA
  GCCTTTATAC AACTTTAATT GTTTTTGTTG TTGCTGTTGT TCTGTTTTTC TATTTTTAAT
  CATAGCACTC AAACTTGGAA AACCTGTTAA GGCAACTACA TGGGATGTTT AAAAAAAAAA
  ATCCAGTTAA CATATTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367526365	MGP_WTSI_6_17412094	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	C	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238767847					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	C	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367526365	MGP_WTSI_6_17412094	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	1221 bp proximal
Met	met proto-oncogene	1706 bp upstream
Rr626799	regulatory region 626799	1216 bp proximal
Rr626800	regulatory region 626800	1380 bp proximal
Rr626801	regulatory region 626801	1423 bp proximal
Rr626802	regulatory region 626802	1955 bp proximal
Tssr55050	transcription start site region 55050	1338 bp upstream
Tssr55051	transcription start site region 55051	1461 bp upstream
Tssr55052	transcription start site region 55052	1655 bp upstream
Tssr55053	transcription start site region 55053	1732 bp upstream
Tssr55054	transcription start site region 55054	1791 bp upstream
Tssr55055	transcription start site region 55055	1807 bp upstream
Tssr55056	transcription start site region 55056	1833 bp upstream
Tssr55057	transcription start site region 55057	1998 bp upstream