rs238768478 SNP Detail

Summary

• ID
  rs238768478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59955840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACTATG TGCTCTCATA GGGGTACATG TATACACCTA
  GGTAGGCCTG AATGAATGGC CCAGTTTTAC TTTGACCATT GCCTGCCTGG CTCTGCCCTT
  TAGCTTTCAT ACTCACTCCC CTGGTACCTG TCAGTTTCCA GAAGTGGTTT CCAAAGCCCT
  Y
  GTGGGCATCT CTTCACTGCG TGCCCTTGTT GTCTGATAGC AGAGCCCCCA TGCCCTCTTC
  TCCTGGGCAT AACAGCTAAA TGCCAGGTCT ATACCACCCC CACTCCTGCA CATCTCTGAC
  TGGGATATGG CAAAGACTAG GATGGGTTTG GTTGCAGGTA GCCATATGTA GTCTCTCCTC
  AGTGTCCCGT GCAGAGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323323916	CHEV_10_59582766	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238768478					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59955840 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	42 bp upstream
Rr219869	regulatory region 219869	1440 bp distal
Rr219870	regulatory region 219870	440 bp distal
Rr228068	regulatory region 228068	1161 bp proximal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	within coordinates