rs238772321 SNP Detail

Summary

• ID
  rs238772321
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114781720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTAGAATA GAAAACAGGA
  GGTCAGGGCA GGTGGTACCA GTATGAGTGG ACAGTGGTTG TGTTGAGAGG CCCTGACAGG
  CACGTGCTGG TGTGGATGTG TGTGAAAAAA TTTAATCTGT CTATCTTTCT TTCCTTCTCT
  TCCTTCCTTC CATCTTTCCC TCTTTCTTTC TTTTCTTCTT GGGTCCCCCC CCCCCTTTTT
  K
  GGTTTTCAAG GCAGGGTTTC TCTGTGTAGC CTTGTTTGTT CTTTCTTTCT CTCTCTCTCT
  TTCTTTCTTT CTTTCTTTCT TTCTTCCTCC CTTCCTTTCT TTCTTTCTTT CTTTTTTGTA
  AGGTTTTTTT TTTTTCATTT TCTTTTTGGG ATAAGTCTCA CTGATTAGCC TTGGATCTCA
  CTCTGTGGAC TAGGGTGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
ss384815803	MGP_WTSI_11_114752208	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
rs238772321					SNP	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384815803	MGP_WTSI_11_114752208	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114781720 () rs orientation: forward

Symbol	Name	Function Class
Cd300a	CD300A molecule	within coordinates
Cpgi4106	CpG island 4106	523 bp distal
Rr459730	regulatory region 459730	548 bp distal
Tssr105810	transcription start site region 105810	691 bp downstream
Tssr105811	transcription start site region 105811	668 bp downstream
Tssr105812	transcription start site region 105812	524 bp downstream
Tssr105813	transcription start site region 105813	508 bp downstream
Tssr105814	transcription start site region 105814	118 bp upstream
Tssr111666	transcription start site region 111666	668 bp upstream