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rs238774388 SNP Detail
Summary
  • ID
    rs238774388
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:26494368 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCAAGTCCTA AAAATAGACT
CAGAAGCAAA GTTTCTGAGA TACTTAATGA GGTCTGACTT CCCGGGGCCC TCTAGCGGCC
ACAGTGGAAC TACAGGGGAG TTCAGTTTCT TGGACAGAAC AAAATTTTCC ATGGCTTTAC
TCTTTGATAG GAAATTATTT TCCAAGCAGT GAGGCACTGT CTAGGCTTAA TAACCTCATG
Y
AATGCTTCCA CAGGAAGATT TTGGCTAGTT CACATTCTGT CTTTTGCCTT TTTGGTGTAA
AGAAGGAACT GTTTTTGGTT TTGTTTTTGT TATTTTTGTT TTTTTTTTTT TGTTTTGTTT
TGTTTTGTTT TTTTGTTTTT CTCATGTTGA CCTAGACTAG GTCAAGTTTC AGTGTTTCTT
GAAAGATATG CTAAGGAACC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385360828 MGP_WTSI_12_27129234 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238774388 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385360828 MGP_WTSI_12_27129234 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:26494368 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr464136 regulatory region 464136 within coordinates
Rsad2 radical S-adenosyl methionine domain containing 2 within coordinates
Tssr112998 transcription start site region 112998 616 bp downstream
Tssr112999 transcription start site region 112999 551 bp downstream
Tssr113000 transcription start site region 113000 450 bp downstream
Tssr113001 transcription start site region 113001 17 bp upstream
Tssr113002 transcription start site region 113002 41 bp upstream
Tssr113003 transcription start site region 113003 116 bp upstream
Tssr113004 transcription start site region 113004 176 bp upstream
Tssr113005 transcription start site region 113005 202 bp upstream
Tssr113006 transcription start site region 113006 565 bp upstream
Tssr113007 transcription start site region 113007 649 bp upstream
Tssr113008 transcription start site region 113008 817 bp upstream
Tssr113009 transcription start site region 113009 835 bp upstream
Tssr113010 transcription start site region 113010 985 bp upstream
Tssr115902 transcription start site region 115902 1499 bp upstream
Tssr115903 transcription start site region 115903 1169 bp upstream
Tssr115904 transcription start site region 115904 1145 bp upstream
Tssr115905 transcription start site region 115905 847 bp upstream
Tssr115906 transcription start site region 115906 727 bp upstream
Tssr115907 transcription start site region 115907 668 bp upstream
Tssr115908 transcription start site region 115908 624 bp upstream
Tssr115909 transcription start site region 115909 540 bp upstream
Tssr115910 transcription start site region 115910 486 bp upstream
Tssr115911 transcription start site region 115911 438 bp upstream
Tssr115912 transcription start site region 115912 424 bp upstream
Tssr115913 transcription start site region 115913 389 bp upstream
Tssr115914 transcription start site region 115914 341 bp upstream
Tssr115915 transcription start site region 115915 298 bp upstream
Tssr115916 transcription start site region 115916 257 bp upstream
Tssr115917 transcription start site region 115917 207 bp upstream
Tssr115918 transcription start site region 115918 192 bp upstream
Tssr115919 transcription start site region 115919 161 bp upstream
Tssr115920 transcription start site region 115920 129 bp upstream
Tssr115921 transcription start site region 115921 164 bp downstream
Tssr115922 transcription start site region 115922 260 bp downstream
Tssr115923 transcription start site region 115923 343 bp downstream
Tssr115924 transcription start site region 115924 414 bp downstream
Tssr115925 transcription start site region 115925 429 bp downstream
Tssr115926 transcription start site region 115926 778 bp downstream
Tssr115927 transcription start site region 115927 822 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory