rs238775391 SNP Detail

Summary

• ID
  rs238775391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19279710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGAAAAC TGGAGCTTCT
  TTGACACCCC AGCTGATATA TTTTAAGCTA TTTACTCGTA GATTTCTGAT CGGGTTTCTG
  AGGTTTCTTT AAGTTTTCTA AGGCTGGCTC TGGGAGACTT TGCTCTCCAG AAAGGGAACT
  TTTAAGGTTG GAATGTGAGA AGTTTAATTT AGGAGCTATT TTCTTTTCCT TTTTGTTTTT
  Y
  TTTCTCTCCG GCTCTCTCCT TCCCCTTGTA GACTCTGGTA GGTAACGTGG AGCCAGGAAT
  TCAGGCAAAC AGTGAGGGAA AAACAGTCTC TCCTCATTTT GAGTACGGGA CAGAATCGGG
  TTTTTAAGCC TCACGCCGAC TGGGACTTTA ATTTTTGCTT TTTAAACTTT TAATATTTTT
  TTTTAAATCG GTAACCAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348817497	MGP_WTSI_1_19199567	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238775391					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348817497	MGP_WTSI_1_19199567	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19279710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	195 bp proximal
Rr408237	regulatory region 408237	1596 bp distal
Rr408238	regulatory region 408238	516 bp distal
Rr408239	regulatory region 408239	within coordinates
Tfap2b	transcription factor AP-2 beta	within coordinates
Tssr6030	transcription start site region 6030	519 bp downstream
Tssr6031	transcription start site region 6031	492 bp downstream
Tssr6032	transcription start site region 6032	475 bp downstream
Tssr6033	transcription start site region 6033	453 bp downstream
Tssr6034	transcription start site region 6034	433 bp downstream
Tssr6035	transcription start site region 6035	397 bp downstream
Tssr6036	transcription start site region 6036	385 bp downstream
Tssr6037	transcription start site region 6037	360 bp downstream
Tssr6038	transcription start site region 6038	333 bp downstream
Tssr6039	transcription start site region 6039	309 bp downstream