rs238783234 SNP Detail

Summary

• ID
  rs238783234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118376358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGGGTAG CAGTAGGTGG
  AAGCGCTTCT CTGGGATAAC TCTCCAGAGT TCCTGGGTTG TGCAAAGCAG ACAAGGAAAA
  GCAAAACAAA CAAAAAAACC CAAAAGTGCC TTCGTTTTTC TAGTATAGTT AGGGAGAGCT
  GGGCTCATCA CTCAGAGATC AGAGCAGCAG CAGCAAAGCG GATGAGAAAA CTCCTGAGGC
  Y
  CACAGAGCAG CCAAGTCGGC TCACCGAGTG CTGGCACCAG AACGGCCGCT GGGGGCGCCT
  GCCACCTCCT GCCTCCTCCC TCTTCCAGCC CGAAGCAGGC CTCATCCAGC TTCTCTGACT
  CCCGCCAGAA CTGCTTTTCC AGAAGTGCCC TATGGGCAGT TCCCTCTGAG AGTAAGTGCA
  GCGCGCTCCT CAGGGCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355412576	MGP_WTSI_2_118371613	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238783234					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355412576	MGP_WTSI_2_118371613	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118376358 () rs orientation: forward

Symbol	Name	Function Class
Bmf	BCL2 modifying factor	within coordinates
Cpgi12082	CpG island 12082	1192 bp distal
Rr397207	regulatory region 397207	within coordinates
Rr397208	regulatory region 397208	626 bp upstream
Rr563263	regulatory region 563263	307 bp proximal
Rr563264	regulatory region 563264	1140 bp proximal
Rr563265	regulatory region 563265	1672 bp proximal
Tssr19559	transcription start site region 19559	866 bp upstream
Tssr25777	transcription start site region 25777	708 bp upstream
Tssr25778	transcription start site region 25778	533 bp upstream
Tssr25779	transcription start site region 25779	1141 bp downstream
Tssr25780	transcription start site region 25780	1664 bp downstream