rs238783953 SNP Detail

Summary

• ID
  rs238783953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165435466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAATAATA CATAATTATT
  AATAATACAA TAATACAAGA GTCTCGCCGC TGAGCTCTGG ATGAGAAAAT CAAGTCCAAG
  AGCCGATGCT CACTCTGCTT CTAAAAGGCG AAAGAGTTAT TGTGGTGTGG GGACATACCC
  AGATCCTCCT CACTGGGTGG GGACAGCCAT GACAACGGTA GGTACTTGCT CTGGTATGGT
  R
  TCTGTGGTGG GAAGGAAACA GATAAGACGG GAGACAGAGC CAGCAATGCC AGAGCCTGAC
  CCATCTACAC TTGGGGACCC CTTTTAAAGA ATTACACATA CAGGTGATTA TCTCTCTAAA
  TCAAGGAAAG GGTTCACAAC TGGTTCCGAC TTGATTTGAT TTTTTGTGTA TGAGCATCCT
  GCTTGTACGT ATGTCTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320608368	CHEV_2_165419046	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238783953					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165435466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	1058 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	1486 bp upstream
Rr569954	regulatory region 569954	387 bp proximal
Rr569955	regulatory region 569955	996 bp proximal
Rr569956	regulatory region 569956	1497 bp proximal
Rr569957	regulatory region 569957	1668 bp proximal
Rr569958	regulatory region 569958	1845 bp proximal
Tssr21727	transcription start site region 21727	1463 bp upstream