rs238784989 SNP Detail

Summary

• ID
  rs238784989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124732504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCAGAGC AACTCCAACC
  TTTCAGGAAA GGGAGCTTTA GGGTAACCTA CCCCAGGCAC AAAGAGATCT CTGAGATCAA
  GGCAGTAAGG AAGTCCTCCT ATGGGACAGC CAATGCTCTG GGGGTGAGGG TGGAGGTCAC
  AATTCCTTGG AATGCCTATA TGATTGCCCA ATCTTCTCTT CTTTCCCATC CTCCCAACCT
  Y
  CCCAATTCTC CCTTCAGTAT CCCTGCCTTT CTTATTCGTG TTAGGAGGAC TCACACTACC
  AAGACTCAGT GCCCCCCCTT CACGAAGTAA CTAGGTCTGG GATTAGGAAA ACGGGGTCAG
  AGGTGACCAG GATTGGGGGA AAGAAAACTG AGTCACAAAA GATATGGCCT TCCCATTTCC
  ACCCCAAAAA ACGTCGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369942275	MGP_WTSI_6_124705559	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238784989					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369942275	MGP_WTSI_6_124705559	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124732504 () rs orientation: forward

Symbol	Name	Function Class
Atn1	atrophin 1	within coordinates
Cpgi17967	CpG island 17967	229 bp proximal
Gm45234	predicted gene 45234	within coordinates
Rr145725	regulatory region 145725	within coordinates
Rr380049	regulatory region 380049	460 bp downstream
Tssr63140	transcription start site region 63140	1524 bp upstream
Tssr63141	transcription start site region 63141	782 bp downstream
Tssr63142	transcription start site region 63142	937 bp downstream
Tssr63143	transcription start site region 63143	1158 bp downstream
Tssr63144	transcription start site region 63144	1285 bp downstream
Tssr63145	transcription start site region 63145	1308 bp downstream
Tssr63146	transcription start site region 63146	1346 bp downstream
Tssr63147	transcription start site region 63147	1421 bp downstream
Tssr63148	transcription start site region 63148	1456 bp downstream
Tssr63149	transcription start site region 63149	1479 bp downstream
Tssr63150	transcription start site region 63150	1698 bp downstream