rs238789580 SNP Detail

Summary

• ID
  rs238789580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174125840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCACCTT TGATAAGGTT
  AGTGTTTACT TGAGGCTCTG ATCCTCAAGC ATTCACGCTC TTCGGTCATT AACACTCATT
  CACGTACGGA TCCTCATTCC CCTGAATATT TACAATTTTG CGTTCTGGTT TTCAATTGTT
  TGGTGGCTAT GCTCATGGAG AAAAAGTTGA GGAGTGGGGA CAACCCCCCG TGGGAATCTA
  Y
  ACTTGGCTTC TAAAATCCGC TAACCTGTAG CTATCTTACT CCCTTCGCTC GCTAGACCTC
  GATATCCAGC CCCCCACCCC CCATGCTTTG GCCAAATCTA CTCAAACAAG GTTCCCGCCT
  GCCACCTGCC GGCCCACTAG GGTCTGCGCC ATGAGCTATG CGCCAACGCA CAGCTCGCGG
  GGAGGCACTC CCGCCCCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356686739	MGP_WTSI_2_174109548	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238789580					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356686739	MGP_WTSI_2_174109548	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174125840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	46 bp proximal
Gnas	GNAS complex locus	273 bp upstream
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	within coordinates
Rr56204	regulatory region 56204	within coordinates
Tssr789	transcription start site region 789	181 bp upstream
Tssr790	transcription start site region 790	221 bp upstream
Tssr22087	transcription start site region 22087	265 bp upstream
Tssr22088	transcription start site region 22088	563 bp upstream
Tssr22089	transcription start site region 22089	1226 bp upstream
Tssr22090	transcription start site region 22090	1250 bp upstream
Tssr22091	transcription start site region 22091	1305 bp upstream
Tssr28006	transcription start site region 28006	1117 bp downstream