rs238795785 SNP Detail

Summary

• ID
  rs238795785
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:46344365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGAGAAA CCCTGTCTCA
  AAAAAAAAAA AAAAAAAAAA AAGTCTGACC AGGGTGACTC CATATGTGCT CAGATGACAC
  TCGAGCTTAC TGGATGGAGT CCCAGGTCAG TGGGAAAGTG GAACGAGGGT CTACCACTTG
  TGCTTCTGGT CCAGGCTATG AATGCTACTA AGTGACCCAA GATACGGTCT TCACTTTCCA
  R
  TTGTCACTGG ATATTCTATT TCGGATTAAT GTATTCCGCG GCTATAGGAG AATCCAGAGA
  GGACTAGTCA CCCTGATACT CAGGTTGGGA ATCAGGACTG TCTGGTCCAT AGCTAAATGA
  CTCCACGCTG CGTGCCAGCT ATGAGCATTG GAGTGGGGTG TGGGATTAGA GTTTTAAGGG
  CTCATACCAG AGAGGCACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325609384	CHEV_18_46370952	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238795785					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:46344365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10017	CpG island 10017	445 bp proximal
Rr345901	regulatory region 345901	1565 bp distal
Rr352866	regulatory region 352866	within coordinates
Trim36	tripartite motif-containing 36	within coordinates
Tssr153216	transcription start site region 153216	1153 bp downstream
Tssr153217	transcription start site region 153217	1271 bp downstream
Tssr153218	transcription start site region 153218	1297 bp downstream
Tssr153219	transcription start site region 153219	1515 bp downstream