rs238800270 SNP Detail

Summary

• ID
  rs238800270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112417874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTCTGA GCCAAATTCT
  TCTTATGAAC CCACTGAGTT TATTTGGGGC TAGGGATTGA AACCAGGGCT TTGAGCAAGC
  TAGGTAAGAG TTCCACTAAC TAAGTTTCAC ACACCCCCCC AGCCCATCTG TTTGTTTGAC
  TCCTTTATCT TTTGTTTTGT TTTGTTTTGT TTTCGAGACA GGGTTTCTCT GTGTATCCCT
  R
  GCTGTCCTGG AACTCACTCT GTAGACCAGG CTGGCCTTGA ATTCAGAAAT CTGCCTGCCT
  CTGCCTCCCA AGTTTTTGGA TTAAAGGTGT GTGCCACCAC TGCCCGGCTT GCTTTATCTA
  TTAAGACATG GTCTGCAGGC TGTCGGAGAT GACTTGGCAG TAAAGAGTAG CCCTGCCAGA
  GGACCTGGGT TCAATGCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366277583	MGP_WTSI_5_112699028	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238800270					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366277583	MGP_WTSI_5_112699028	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112417874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	475 bp distal
Cpgi16257	CpG island 16257	1177 bp proximal
Crybb1	crystallin, beta B1	423 bp downstream
Gm46941	predicted gene, 46941	713 bp downstream
Rr617313	regulatory region 617313	556 bp proximal
Rr617314	regulatory region 617314	1381 bp proximal
Tssr47980	transcription start site region 47980	690 bp downstream
Tssr47981	transcription start site region 47981	544 bp downstream
Tssr47982	transcription start site region 47982	526 bp downstream
Tssr47983	transcription start site region 47983	512 bp downstream
Tssr47984	transcription start site region 47984	502 bp downstream
Tssr47985	transcription start site region 47985	463 bp downstream
Tssr52561	transcription start site region 52561	491 bp upstream
Tssr52562	transcription start site region 52562	457 bp upstream