rs238804299 SNP Detail

Summary

• ID
  rs238804299
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136495530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAACAAA ACAAAACAAA
  AAGATAAAAA TTAAAAAAAA TTTTTTTTTC GAATAAATTA CCGTACTCTA GGTTCTCTAG
  ACTTATGGAA AAATCTTTTC GCTTTTTAAA CACCTACTTT TTTTTTTCTC AAGTCTCATG
  GAGGGGTGGC CACTGAGGAA TCTCCATGCA AAAAAAAAAA TAAAAAAATT AAAAAAAAAA
  M
  AAAAAAAACC CCAATCACCT CCAGGATAAA AAAGAAAAGA GCCAACCGGA AAAAAAAAAA
  ATCACCTCCG GATGCGATCG AAAAGACGGC AGCGCCACCA CCGCAGACGG GCTACAATTT
  CAAGGCAGGA GGCGTGGCCA AAAATCCCTC ATTCAAATAA AAAACCAGGA GATTTGCATG
  GAGAATAGGC ATCGCGCACG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	SJL/J	SM/J	WSB/EiJ
ss370211551	MGP_WTSI_6_136467053	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	C	C	C	C	C	C	C	C	A	A	C	C	A	A	C	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	SJL/J	SM/J	WSB/EiJ
rs238804299					SNP	C	A	A	C	C	C	C	C	C	C	C	A	A	C	C	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370211551	MGP_WTSI_6_136467053	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136495530 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	257 bp upstream
Cpgi18104	CpG island 18104	69 bp proximal
Gm44140	predicted gene, 44140	within coordinates
Rr133547	regulatory region 133547	within coordinates
Rr145858	regulatory region 145858	within coordinates
Rr400014	regulatory region 400014	36 bp upstream
Rr400015	regulatory region 400015	434 bp upstream
Tssr59315	transcription start site region 59315	254 bp upstream
Tssr59316	transcription start site region 59316	288 bp upstream
Tssr59317	transcription start site region 59317	334 bp upstream
Tssr59318	transcription start site region 59318	1871 bp upstream
Tssr63803	transcription start site region 63803	31 bp upstream
Tssr63804	transcription start site region 63804	229 bp downstream
Tssr63805	transcription start site region 63805	526 bp downstream