rs238806658 SNP Detail

Summary

• ID
  rs238806658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122240586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAAGGGC AACTGAGTAC
  TGCTCTACCT GTTGCCCTCA ATAGTGGGGC TGTGCCTTAC AGCATGTGCC TAACTAAAGT
  GGCAAAGTAT AGCCACCGGC CACAGCCAAG AAGGACAGGC TCAGAGTCCT GTCCTCGCAG
  TGTTGTGTGG TCCTCCCTTC TCACCTGGCC CTTGGGGGAA TAGGTGGACA GCGGCCATCA
  Y
  AGAGGCACAC CTAGGCAGGT TATAAGGAGG TACCTCTGCC CCTGCCAACT CAAAAGGCAG
  GAAGGCCACC TCCTGCAGGT CACCAGGTTT TACTCCTGCC ATGTCCCCTC CCCTCCCCAG
  CTGAACCTCT TGTCCCTGCC CTGTCTCAGC TGAGCAGTGA CTCTCCCCAC AGGCCTTCAC
  AATCATGGAC CAGAACAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366510635	MGP_WTSI_5_122552532	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238806658					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366510635	MGP_WTSI_5_122552532	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122240586 () rs orientation: forward

Symbol	Name	Function Class
Myl2	myosin, light polypeptide 2, regulatory, cardiac, slow	within coordinates
Rr108983	regulatory region 108983	1415 bp proximal
Rr124298	regulatory region 124298	within coordinates
Rr407055	regulatory region 407055	674 bp distal
Tssr48619	transcription start site region 48619	1716 bp downstream
Tssr48620	transcription start site region 48620	1672 bp downstream
Tssr48621	transcription start site region 48621	1565 bp downstream
Tssr48622	transcription start site region 48622	1537 bp downstream
Tssr48623	transcription start site region 48623	1364 bp downstream
Tssr48624	transcription start site region 48624	1346 bp downstream
Tssr48625	transcription start site region 48625	724 bp downstream
Tssr48626	transcription start site region 48626	127 bp upstream
Tssr48627	transcription start site region 48627	147 bp upstream
Tssr48628	transcription start site region 48628	325 bp upstream
Tssr48629	transcription start site region 48629	373 bp upstream
Tssr48630	transcription start site region 48630	447 bp upstream
Tssr48631	transcription start site region 48631	624 bp upstream
Tssr48632	transcription start site region 48632	645 bp upstream
Tssr53075	transcription start site region 53075	202 bp downstream
Tssr53076	transcription start site region 53076	1351 bp downstream