rs238809803 SNP Detail

Summary

• ID
  rs238809803
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56429725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACATCAGA CTGGGCTACA
  TACTGAGACT GTCCAACAAC AAAACCCACA ACAGCAAAAT GCATTTCAAG GCTATGAATT
  TGCCTTTGAG GACACCTTTG GCTGTATCTA TGTGTGATGT GCACACACAC TTGCACAGGC
  TACAGGTTGA TTCTGGGTGT CTTCCTCAAT GGTTCTCCAC ATTGTCTACT GAGGCAGGAC
  Y
  TCTCATTAAC TGGGCTAGGC TGACTTGCAA GAGGTCAGGG ACCTTCCTGT GTCTGCTTCC
  CAAGTGCTAA AATTACAGGC ATGTACCATT ACACCTGGCC TTTTCTGTGA GTACTAAGGG
  ATTCAAACTC AGGTCTTCTT GCTTGCACAG GAAGTGTTTC CCCTGCAATC AGCTAGTTCC
  TCCTTGTTGT CATCTCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398551844	MGP_WTSI_17_56262148	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238809803					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398551844	MGP_WTSI_17_56262148	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56429725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9340	CpG island 9340	1798 bp distal
Cpgi9341	CpG island 9341	706 bp proximal
Gm56918	predicted gene, 56918	1648 bp downstream
Lrg1	leucine-rich alpha-2-glycoprotein 1	779 bp upstream
Rr340022	regulatory region 340022	724 bp distal
Rr340023	regulatory region 340023	1075 bp proximal
Sema6b	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	360 bp downstream
Tssr5175	transcription start site region 5175	783 bp upstream
Tssr148755	transcription start site region 148755	1907 bp upstream
Tssr148756	transcription start site region 148756	1877 bp upstream
Tssr148757	transcription start site region 148757	1697 bp upstream
Tssr148758	transcription start site region 148758	1662 bp upstream
Tssr148759	transcription start site region 148759	805 bp upstream
Tssr148760	transcription start site region 148760	767 bp upstream
Tssr148761	transcription start site region 148761	739 bp upstream
Tssr148762	transcription start site region 148762	724 bp upstream