rs238810680 SNP Detail

Summary

• ID
  rs238810680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124748497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCGCCGA GGCGCCAGTT
  TGGCGGATGC GGACACCAGT CCTAACAGGA GGGAACCGGC TGGAGAGCCG GGATCGGAGG
  AGCCTCTGCC CGAGGGAGTT CCCGCTATGG AACCCTGCTT GAGGTTCTGA ACTGCTTTAC
  CCCGAACTGA AGGAGCTCCA CTTGAGAGAA CCTTGATCTG AGGGAGACCC ACGTTAGAGA
  R
  CACCCCGATC TCCTACACGG AGCTCGGACT CGAGGGAGCC CCGATCCAGG TAGTAGGATT
  TGAAGGTATC ATGATAAACT AGAACCACCA CCTCCTCCTC CTCCTCCTCC TCCACCACCA
  CCACCACCAC CACCACCACC ACCACCACCA CCACCAAAAC CAAACTTTTT ATTTGTATGG
  GTGTTTTATG TACACCCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376355948	MGP_WTSI_8_126545658	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238810680					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376355948	MGP_WTSI_8_126545658	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124748497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21265	CpG island 21265	within coordinates
Mir1967	microRNA 1967	883 bp upstream
Rr672602	regulatory region 672602	761 bp distal
Rr672603	regulatory region 672603	916 bp distal
Rr672604	regulatory region 672604	759 bp distal
Rr672605	regulatory region 672605	within coordinates
Taf5l	TATA-box binding protein associated factor 5 like	361 bp upstream
Tssr80012	transcription start site region 80012	557 bp downstream
Tssr80013	transcription start site region 80013	243 bp downstream
Tssr80014	transcription start site region 80014	228 bp downstream
Tssr80015	transcription start site region 80015	179 bp downstream
Tssr83422	transcription start site region 83422	803 bp upstream
Tssr83423	transcription start site region 83423	652 bp upstream
Tssr83424	transcription start site region 83424	313 bp upstream
Urb2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	within coordinates