rs238811330 SNP Detail

Summary

• ID
  rs238811330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16347699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTCTGAA TGGCAAAATG
  GGAGCAAGCA CTGAGAAGGG AAGGAAGCGA GCAAGGCGCA TCAGAATCTG AGAACCGTAG
  GAGAAGGAGC TTAGGGACAT CCTAGGAGGT GCAGAAGGTT CAGTGTTGCG ACCCGGCAAA
  ATATGGGGCA GTTGGGCCCA AATACAAGGA GGAATTATGT CCAAAGCCAA GACCGGGAGG
  R
  CAGTAGAGCA GTGCCTGTAT CAACAGACCA ATACGGATCT CCACGGAGGT GGAACCGCAG
  GTCCTAAAGG GACAGCTCCT GGGGATGCAA GATGTTCTAC CGCAGGGATA ATAACAGTAA
  ATAGGCCAAA GAAGGAGAAT GGGGATTTCC TCCCAAAAGT GATGCTAGCA GAAAACAGGT
  AAGGTAGAAG GGCCACGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370695718	MGP_WTSI_7_17199123	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238811330					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370695718	MGP_WTSI_7_17199123	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16347699 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	within coordinates
Cpgi18383	CpG island 18383	42 bp proximal
Gm29443	predicted gene 29443	50 bp upstream
Rr400125	regulatory region 400125	1601 bp upstream
Rr642705	regulatory region 642705	1928 bp distal
Rr642706	regulatory region 642706	within coordinates
Rr642707	regulatory region 642707	61 bp proximal
Rr642708	regulatory region 642708	1209 bp proximal
Rr642709	regulatory region 642709	1314 bp proximal
Tssr64615	transcription start site region 64615	1833 bp upstream
Tssr70753	transcription start site region 70753	774 bp downstream
Tssr70754	transcription start site region 70754	839 bp downstream
Tssr70755	transcription start site region 70755	896 bp downstream
Tssr70756	transcription start site region 70756	1004 bp downstream
Tssr70757	transcription start site region 70757	1018 bp downstream
Tssr70758	transcription start site region 70758	1075 bp downstream
Tssr70759	transcription start site region 70759	1107 bp downstream
Tssr70760	transcription start site region 70760	1184 bp downstream
Tssr70761	transcription start site region 70761	1280 bp downstream
Tssr70762	transcription start site region 70762	1299 bp downstream
Tssr70763	transcription start site region 70763	1492 bp downstream