rs238814291 SNP Detail

Summary

• ID
  rs238814291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123622863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAAGACGG TGTCTGGAAA CCATAAGCTC
  GCCCTAGGGA CAAATGTCTC AACTTGTGTA CAGGACAGAT GCTGTTCATA TGGGTGCTCT
  GTCTTGGTCC CTTTTCTAGC CACCTGCCTA TCATTCCCTT TTATTGTTTC ATGCTGACCA
  Y
  TCCTGAGATC ACACCCTTGA GCCTGCAGCT GAGCCTCAGT ACTGCCTGAA GCAACTGGGG
  AGCTCAAGAT GGCAAAGGCT GCTCCTGTGA CATACAACAA AGCCTAGAGG GTTTGTCCTT
  TTTTGGTCTC ATTTTTTCTT TTATATTCAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234356	CHEV_9_123702916	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238814291					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123622863 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	1732 bp upstream
Tssr92158	transcription start site region 92158	1726 bp upstream
Tssr92159	transcription start site region 92159	1702 bp upstream
Tssr92160	transcription start site region 92160	1327 bp upstream
Tssr92161	transcription start site region 92161	1306 bp upstream
Tssr92162	transcription start site region 92162	1027 bp downstream