rs238820716 SNP Detail

Summary

• ID
  rs238820716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94878857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGGGAT TAAGAGTTTA
  GGTCTTCCTT GGCTGCAAAA CAATTTGTAT AATTCCTTGG TTACATAAAA AAAAAGACTA
  GACTGGACTA CCTAAGACTC TGTCTCAATA ACAAAGAGAA GCAACCTCGA ACTACCTCCA
  AACAGAGAAT GGTGGTCCCT AGTGGGTGTC TCTGTAAAAT TTATCTGGGC TAAGGAGGTG
  Y
  TCAGGGTCCT GTAGAAGGGC TTTATAGGAA ATATTGGGAC AGAAAAGGCC ACGAGTCTTC
  CCACCAAACT GCAGGTGTCA GGTAGGATCT GTCAGGTCTC CCCTTTCTAG CCTTCTTCAA
  GCATCTTGGG AGCATCTTTG CTGCTGCTGC TGCTGCTGCT GCTGCTGCTG CTGAGATGAT
  CAGCAGCAGG CTCACTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375635761	MGP_WTSI_8_96676129	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	T	T	C	C	C	C	C	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238820716					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	T	T	C	C	C	C	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375635761	MGP_WTSI_8_96676129	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94878857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20837	CpG island 20837	254 bp proximal
Mt3	metallothionein 3	378 bp upstream
Rr187118	regulatory region 187118	within coordinates
Tssr78818	transcription start site region 78818	506 bp upstream
Tssr78819	transcription start site region 78819	763 bp upstream
Tssr78820	transcription start site region 78820	793 bp upstream
Tssr78821	transcription start site region 78821	1666 bp upstream
Tssr82483	transcription start site region 82483	1722 bp downstream
Tssr82484	transcription start site region 82484	1777 bp downstream
Tssr82485	transcription start site region 82485	1915 bp downstream