rs238824833 SNP Detail

Summary

• ID
  rs238824833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCATTCA TGTTCCTATA
  GGCTAACCTG ACCTAGAAAA TCCCTCACGG GCAAGCTCAT AGGTTTGCCC CTAGATGATT
  CTAGAGCCCG TCAGGGAGTC AGTCATTAAC CATCTTGCAC ACGCATGAGA TATTCTGTTT
  CAAACAAAAA GTGGAAGGTA CCCAAGGACC AGAACTTATC CTAATGACCA TGCACACGCT
  R
  TGCTCCCTGC ACTCCTGGAA CTGCTTCCAA GCAAGTGGCT GTCTCCTCTG CAGCCCTGTC
  CCAAGCCCTC AACACCACGG TGCTGCAGGG CATGGCCGGC CAGTCCTTGA GGGTGTCATG
  TACTTATGAC GCCTTGAAGC ACTGGGGGAG ACGCAAGGCC TGGTGTCGGC AGCTGGGTGA
  GGAGGGCCCA TGCCAGCGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408122	CHEV_17_48487728	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238824833					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655431 () rs orientation: forward

Symbol	Name	Function Class
Rr335234	regulatory region 335234	1430 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1986 bp downstream
Tssr145094	transcription start site region 145094	1958 bp downstream
Tssr145095	transcription start site region 145095	1910 bp downstream
Tssr145096	transcription start site region 145096	1877 bp downstream
Tssr145097	transcription start site region 145097	872 bp downstream
Tssr145098	transcription start site region 145098	530 bp downstream
Tssr145099	transcription start site region 145099	77 bp upstream
Tssr145100	transcription start site region 145100	106 bp upstream
Tssr145101	transcription start site region 145101	143 bp upstream
Tssr145102	transcription start site region 145102	242 bp upstream
Tssr148525	transcription start site region 148525	287 bp downstream