rs238826506 SNP Detail

Summary

• ID
  rs238826506
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15889405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGAATCT GAAATCAGTG
  GGAATTGGAG GAGATCAATG AACAGATAAT GAAATTCATT GTCCACATTG AGCTGTCTAT
  TAAAAAAAAA AAAATAGGAG GGGAAAAAAG CCTTCGGGAG TTTTACAGGC ACTGACAACG
  CTTTGTCTTC AGCTGCCCCA AGCCACATCT GAATCCCAAT AAATGCAGAG TTTAGTGGGG
  K
  TTTTGTTCCA TGGTTTTGAA AAGCTGCTGA CCCTTAAAAG GTCAAGTTTT TATCCACTTG
  GAGAGGGGGC TGAACACAAG CTGCAGCTGC TATTGTGTAG AGTGGTCCAG ATTTACCTGT
  TGTCCTCAGT TTGAAGGTTG CACAAAAGCC TACTCAAGAC TCGAAAACCT GAAAACCCAC
  TTGAGATCTC ACACTGGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387813927	MGP_WTSI_13_15806653	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T	G	T	T	T	G	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	G	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238826506					SNP	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T	G	T	T	T	G	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	G	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387813927	MGP_WTSI_13_15806653	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15889405 () rs orientation: forward

Symbol	Name	Function Class
Gli3	GLI-Kruppel family member GLI3	within coordinates
Rr2117	regulatory region 2117	within coordinates
Rr2118	regulatory region 2118	1064 bp proximal
Rr475256	regulatory region 475256	501 bp proximal