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rs238833066 SNP Detail
Summary
  • ID
    rs238833066
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:5848299 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACTTTCTGGA AACAAAATAT
GTAGTTACCT TTTACTCTGA CCATCATCTC CCACCTGCCT AAGGTACTTA GTCCTTAGTT
AGACGGCCTC TATGCCAGGC CTGCAATTAT TAAATGCTCA TCACTGCATG GAGAATAAAA
TTTGTCTTTC CTGCCTTAAA GTTAATTTCG GTCTTCTGGC TCAAATCCTG ATCTGGTCCA
Y
TTAAGTGTTC GAAGTCAAGT TTCTGAAAAG ATTAGAGAAG AACATCCCCC CAAAATTGCC
CACACTAACT ACAGACAACA AACAAGACTT TATTTAAATA AGGAGACAGC CTTCTAAATA
CATACATTCT CTAGTGAAGT ATTTTATTAA TTTGTATAAT TTAATGATTT TAAGCACAAG
TACATTGGAG CACATTTAAA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662580 MGP_WTSI_19_5798271 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238833066 SNP C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662580 MGP_WTSI_19_5798271 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848299 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 729 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 within coordinates
Rr543162 regulatory region 543162 289 bp proximal
Rr543163 regulatory region 543163 1147 bp proximal
Tssr5415 transcription start site region 5415 1405 bp upstream
Tssr5416 transcription start site region 5416 956 bp upstream
Tssr5417 transcription start site region 5417 755 bp downstream
Tssr5418 transcription start site region 5418 1238 bp downstream
Tssr5419 transcription start site region 5419 1892 bp downstream
Tssr5420 transcription start site region 5420 1909 bp downstream
Tssr157645 transcription start site region 157645 1890 bp upstream
Tssr157646 transcription start site region 157646 1788 bp upstream
Tssr157647 transcription start site region 157647 1701 bp upstream
Tssr157648 transcription start site region 157648 1534 bp upstream
Tssr157649 transcription start site region 157649 1442 bp upstream
Tssr157650 transcription start site region 157650 1377 bp upstream
Tssr157651 transcription start site region 157651 1307 bp upstream
Tssr157652 transcription start site region 157652 1167 bp upstream
Tssr157653 transcription start site region 157653 1083 bp upstream
Tssr157654 transcription start site region 157654 1029 bp upstream
Tssr157655 transcription start site region 157655 1003 bp upstream
Tssr157656 transcription start site region 157656 970 bp upstream
Tssr157657 transcription start site region 157657 850 bp upstream
Tssr157658 transcription start site region 157658 744 bp upstream
Tssr157659 transcription start site region 157659 640 bp upstream
Tssr157660 transcription start site region 157660 544 bp upstream
Tssr157661 transcription start site region 157661 511 bp upstream
Tssr157662 transcription start site region 157662 418 bp upstream
Tssr157663 transcription start site region 157663 357 bp upstream
Tssr157664 transcription start site region 157664 243 bp upstream
Tssr157665 transcription start site region 157665 234 bp upstream
Tssr157666 transcription start site region 157666 202 bp upstream
Tssr157667 transcription start site region 157667 39 bp downstream
Tssr157668 transcription start site region 157668 86 bp downstream
Tssr157669 transcription start site region 157669 101 bp downstream
Tssr157670 transcription start site region 157670 121 bp downstream
Tssr157671 transcription start site region 157671 138 bp downstream
Tssr157672 transcription start site region 157672 187 bp downstream
Tssr157673 transcription start site region 157673 204 bp downstream
Tssr157674 transcription start site region 157674 234 bp downstream
Tssr157675 transcription start site region 157675 253 bp downstream
Tssr157676 transcription start site region 157676 264 bp downstream
Tssr157677 transcription start site region 157677 286 bp downstream
Tssr157678 transcription start site region 157678 298 bp downstream
Tssr157679 transcription start site region 157679 335 bp downstream
Tssr157680 transcription start site region 157680 390 bp downstream
Tssr157681 transcription start site region 157681 419 bp downstream
Tssr157682 transcription start site region 157682 437 bp downstream
Tssr157683 transcription start site region 157683 463 bp downstream
Tssr157684 transcription start site region 157684 479 bp downstream
Tssr157685 transcription start site region 157685 489 bp downstream
Tssr157686 transcription start site region 157686 504 bp downstream
Tssr157687 transcription start site region 157687 573 bp downstream
Tssr157688 transcription start site region 157688 623 bp downstream
Tssr157689 transcription start site region 157689 654 bp downstream
Tssr157690 transcription start site region 157690 732 bp downstream
Tssr157691 transcription start site region 157691 778 bp downstream
Tssr157692 transcription start site region 157692 832 bp downstream
Tssr157693 transcription start site region 157693 889 bp downstream
Tssr157694 transcription start site region 157694 947 bp downstream
Tssr157695 transcription start site region 157695 1011 bp downstream
Tssr157696 transcription start site region 157696 1032 bp downstream
Tssr157697 transcription start site region 157697 1081 bp downstream
Tssr157698 transcription start site region 157698 1097 bp downstream
Tssr157699 transcription start site region 157699 1155 bp downstream
Tssr157700 transcription start site region 157700 1204 bp downstream
Tssr157701 transcription start site region 157701 1222 bp downstream
Tssr157702 transcription start site region 157702 1258 bp downstream
Tssr157703 transcription start site region 157703 1309 bp downstream
Tssr157704 transcription start site region 157704 1335 bp downstream
Tssr157705 transcription start site region 157705 1356 bp downstream
Tssr157706 transcription start site region 157706 1404 bp downstream
Tssr157707 transcription start site region 157707 1450 bp downstream
Tssr157708 transcription start site region 157708 1460 bp downstream
Tssr157709 transcription start site region 157709 1472 bp downstream
Tssr157710 transcription start site region 157710 1491 bp downstream
Tssr157711 transcription start site region 157711 1510 bp downstream
Tssr157712 transcription start site region 157712 1547 bp downstream
Tssr157713 transcription start site region 157713 1574 bp downstream
Tssr157714 transcription start site region 157714 1625 bp downstream
Tssr157715 transcription start site region 157715 1642 bp downstream
Tssr157716 transcription start site region 157716 1686 bp downstream
Tssr157717 transcription start site region 157717 1713 bp downstream
Tssr157718 transcription start site region 157718 1758 bp downstream
Tssr157719 transcription start site region 157719 1812 bp downstream
Tssr157720 transcription start site region 157720 1831 bp downstream
Tssr157721 transcription start site region 157721 1867 bp downstream
Tssr157722 transcription start site region 157722 1884 bp downstream
Tssr157723 transcription start site region 157723 1959 bp downstream
Tssr157724 transcription start site region 157724 1968 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory