rs238834475 SNP Detail

Summary

• ID
  rs238834475
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189790050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACGGCCTTG GGATGCCCAA GTCCTTCCAT
  TCATCTCCCA ACCAGGATGC TGACACTTGG GAATGCTTAG TTAGGATGAT GTTTTCCTTT
  ATGTTTATAA TGCTTTGCAT AATCTTTTGT TTGTAGAGTG GACAAAGTGC TCTCTAGGCA
  R
  GAAAGAAGGG TATGGTCAAC CCAGAAGAAT AGAGGAGTGG CCTGGAAGCT GCTGGCTTCT
  CCATACAGCC CCCACCACTC CTGGCCTTCC TGCTTGCATC TATTTCATTA GGTGCCTTCT
  TTTTGATTAG CTGTTACTCT AGTGTTCTGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320192081	CHEV_1_191881732	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238834475					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189790050 () rs orientation: forward

Symbol	Name	Function Class
Gm30446	predicted gene, 30446	within coordinates
Rr21243	regulatory region 21243	within coordinates
Rr32812	regulatory region 32812	951 bp proximal
Tssr10700	transcription start site region 10700	1470 bp upstream