rs238835371 SNP Detail

Summary

• ID
  rs238835371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47718303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGT CAGGGCAGGT AAGTCTGCCC
  Y
  TTTTTGTAAT GAGAGAACTC ATAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325827248	CHEV_19_47804354	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238835371					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47718303 () rs orientation: forward

Symbol	Name	Function Class
Gm58934	predicted gene, 58934	within coordinates
Rr370527	regulatory region 370527	1223 bp upstream
Rr549123	regulatory region 549123	572 bp proximal
Rr549124	regulatory region 549124	1333 bp proximal
Rr549125	regulatory region 549125	1474 bp proximal
Rr549126	regulatory region 549126	1602 bp proximal
Rr549127	regulatory region 549127	1685 bp proximal
Rr549128	regulatory region 549128	1829 bp proximal
Sfr1	SWI5 dependent recombination repair 1	1856 bp upstream
Tssr156884	transcription start site region 156884	1879 bp upstream
Tssr156885	transcription start site region 156885	1910 bp upstream