rs238842657 SNP Detail

Summary

• ID
  rs238842657
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:25590593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGAAGG GTGTGCCATC
  TCTCCACCAA AGGACAGGCA GTTCCCAAAT TGATCCCGGG TAGAAATTCG CCAGTTAAGA
  GGTAGGTAAG ACTCCCATGT AAGCCAGCTA AAACTCCACT AAGGGTACCA GTAATCTGTA
  AAAAGACATC TGCAGATACA GCCAAAGGAC TCATCAGTCT AAAGACAATA GCTAGAGAAA
  H
  GTTGCCTGAC ACAACCTGAG GCCCCACCTT TCTTCTGTTT CTTCTCAGTG ATAGCTTTCA
  TTCATTTGCT CAACAAACTC TACTCTTCTT AGAACCCTGC CTCAGGCAGC ACCCAGGGAA
  AGCTAAACTC TGCCAAGGCC ACTGATTATG CTTCAGAAAT CCTCCTCTGG CTTCTCCAAA
  CACCAGGGAC TCCAGTTTGA                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373995032	MGP_WTSI_8_26211049	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238842657					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373995032	MGP_WTSI_8_26211049	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25590593 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830408C22Rik	RIKEN cDNA 5830408C22 gene			1602 bp upstream
Cpgi20179	CpG island 20179			971 bp proximal
Gm63711	predicted gene, 63711			298 bp downstream
Plekha2	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2			Intron
				Noncoding-Transcript-Variant
Rr661037	regulatory region 661037			1025 bp distal
Rr661038	regulatory region 661038			within coordinates
Rr661039	regulatory region 661039			665 bp proximal
Rr661040	regulatory region 661040			1166 bp proximal
Rr661041	regulatory region 661041			1235 bp proximal
Rr661042	regulatory region 661042			1398 bp proximal
Rr661043	regulatory region 661043			1789 bp proximal
Tssr2524	transcription start site region 2524			1029 bp upstream
Tssr76668	transcription start site region 76668			495 bp upstream
Tssr76669	transcription start site region 76669			1293 bp upstream
Tssr76670	transcription start site region 76670			1337 bp upstream
Tssr80677	transcription start site region 80677			1022 bp downstream
Tssr80678	transcription start site region 80678			1125 bp downstream
Tssr80679	transcription start site region 80679			1157 bp downstream
Tssr80680	transcription start site region 80680			1530 bp downstream
Tssr80681	transcription start site region 80681			1602 bp downstream
Tssr80682	transcription start site region 80682			1792 bp downstream
Tssr80683	transcription start site region 80683			1966 bp downstream