rs238843142 SNP Detail

Summary

• ID
  rs238843142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96085744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGGCCTGA TAAGAGCTTT GGGGGGAGGG
  GAAGGGCTGA TGTGCTATTA CTGGACACTG CCCTAGTGTA AGCCCCAGGA GCAGGATATT
  GTCCACAGCA GTGGCTCAGG CCCCAGTCCT AGCTCCCCTC TCCAATAGCT GTTCTAGGCA
  Y
  AGCATCGATC TGAGATCTGG GGGCTCCTTC TCAGATGCAC CCTCCCTGCG GGCTTATGTC
  CCTCCATATT GCTTCAACAG GCCTGGGGAA GGACAGCCTG GCTCAGTGCC CAGACCCAGC
  CAGAGACGCT GGGTGTAGAG AGGATTAGGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322811428	CHEV_8_97883016	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238843142					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96085744 () rs orientation: forward

Symbol	Name	Function Class
Mmp15	matrix metallopeptidase 15	within coordinates
Rr1960	regulatory region 1960	within coordinates
Rr668228	regulatory region 668228	1578 bp distal
Rr668229	regulatory region 668229	within coordinates
Rr668230	regulatory region 668230	829 bp proximal