rs238844942 SNP Detail

Summary

• ID
  rs238844942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136612236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTAGTTG GTAGATTGCT
  TACCCAGCAG GCATAAATAA AGCCTTGGTT CCATCTACAA CATGCATAAA CCTAGCATGG
  TGCATGTCTA TAATCCCAGC ACTCAGGGGT AGAGGCAGGA TGATCCAGAG TTCAAGGTCA
  GAAGCTATAG AGGTGGCTCA GCAATTAAGC ACACTTACTC TGGGCGAAAA TCTCAGTTTA
  R
  TTGCCAATAC TCCTATAAGA TTGTTCACAG TAACCTACAC TCTAGCTCCT AGGGATCCAG
  CGCCCTCTCT GGCCATCACA GGAACCTGCA CTTAGATGCA CATACTCACA AACACATGTG
  CATCCACAGA AATAAGAATT TAATTTTTAA ACAGAGGTTG TGGTTATCCT GTCTGTATAG
  AGCATTTAAG ACTACCCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss366858475	MGP_WTSI_5_137059252	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238844942					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366858475	MGP_WTSI_5_137059252	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136612236 () rs orientation: forward

Symbol	Name	Function Class
Rr622654	regulatory region 622654	871 bp distal
Rr622655	regulatory region 622655	393 bp proximal
Rr622656	regulatory region 622656	1285 bp proximal
Tssr1674	transcription start site region 1674	1734 bp upstream
Tssr1675	transcription start site region 1675	1679 bp upstream
Tssr53860	transcription start site region 53860	1802 bp upstream
Tssr53861	transcription start site region 53861	1746 bp upstream
Tssr53862	transcription start site region 53862	1702 bp upstream
Tssr53863	transcription start site region 53863	1694 bp upstream
Tssr53864	transcription start site region 53864	1639 bp upstream
Tssr53865	transcription start site region 53865	1611 bp upstream
Tssr53866	transcription start site region 53866	1597 bp upstream
Tssr53867	transcription start site region 53867	1512 bp upstream