rs238846852 SNP Detail

Summary

• ID
  rs238846852
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25236247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGTCCCC CCCGCCCCCC
  AATGCATTTA GTATGAAGCT GGGGGAAGAC AAAAAAGCCA AAATCCTCTG CTTGGTTAAT
  CTTTGGGTGG CTTGTAAAGA TAACATGACC TGAATGGACC ACCTTGAACT ACACTGTCCT
  TCAGTAATGT CTACATGATG CAGCTAGTGA TCTTATTCTG GCCCAGAGAG CTAAACTTTA
  S
  ATCATTGGTC ACTATCCCGA AAGGCTACTT TAGAACCCAT CCTCTTGTTG AACAAGAGAC
  TCTAAAAGGA GTATCTTGTC TTTAAGCCTA CTTGTTAGTA TGACTCCTTG GGCATAATGA
  ATTTGACCTG CTTTCCTAAG AGTTGGCATG ATGGAGGCAC TCACCTCTGA AAATAATTGA
  ATATAAAAAT ACTCAGTATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397867918	MGP_WTSI_17_25154218	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238846852					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397867918	MGP_WTSI_17_25154218	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25236247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8752	CpG island 8752	250 bp distal
Cramp1	cramped chromatin regulator 1	1485 bp upstream
Ift140	intraflagellar transport 140	within coordinates
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	1212 bp downstream
Tssr143119	transcription start site region 143119	1149 bp downstream
Tssr143120	transcription start site region 143120	850 bp downstream
Tssr143121	transcription start site region 143121	694 bp downstream
Tssr143122	transcription start site region 143122	685 bp downstream
Tssr146805	transcription start site region 146805	1570 bp upstream
Tssr146806	transcription start site region 146806	1555 bp upstream
Tssr146807	transcription start site region 146807	1520 bp upstream
Tssr146808	transcription start site region 146808	1482 bp upstream
Tssr146809	transcription start site region 146809	1452 bp upstream