rs238849881 SNP Detail

Summary

• ID
  rs238849881
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96143226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATAATG AAAGCAGTCG
  TATACTTTTT AAAAGTAAAT CAGATTCATT ATGAATAAAG TATAAACAAG TAACACAAAG
  GGGAATTCTG TGTTCTTATA TAATTTTCAC TTATACATAT TATAGCTACT CTTTTTGGGG
  CGGGGGGACC TATATGGTCT TATATGTAGC TCAGTCTGTT AGAACTTTGG AGGTGGGGGT
  R
  GGGGTGGAGG CAGGTACAAG GTTGCACTAT GTAGCTCTGA CTGGCTTGGA ACTCAGCTCG
  ACCTCCCTCT GCCTCTCTCA TGCTGGTTTT AAAGACCTGC TAGTTTTAAA GGTGTAAGCC
  ACCATGCTGG GCCTGGCCTA GAACTCTTGG TCCTCCTGCT TCCGTCCCCA GAGTGCTAAG
  ATAATAGAAA TATGCCACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107380	CHEV_9_96161592	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238849881					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96143226 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1939 bp downstream
Tssr86595	transcription start site region 86595	1912 bp downstream
Tssr86596	transcription start site region 86596	1896 bp downstream