rs238851613 SNP Detail

Summary

• ID
  rs238851613
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81319705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAACCCC TTCAGCTCCT
  TCAGTCCTTT CTCCAGATCC TTGTGTGTTC ATTTTAATTA TTGCAGTAAA ATATTCTGTA
  TATTGATGAC TGAATTTGGT GCTTCCTTTT TTTTTTCCAG AGAAGGAAGA GGCAAAAGGA
  TCAGGGTTCA AGATCATTCT TGGCTACAGA GAGTTGGAGG GTAGCTTGGG GGTACATAAG
  M
  TAGTGTCTCA AATACATAAA AGAACTAAGG AGTCCTGTTC CTATAATTTG TTTTCGTAAA
  AAGATTTATC TAGCAGGGCG TGGTGGCACA CGCCTTTAAT CCCAGCACTC GGGAGGCAGA
  GGCAGGTGGA TTTCTGAGTT CGAGGCCAGC CTGGTCTACA GAGTGAGGTC CAGGACAGCC
  AGGGCTATAC AGAGAAACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381036808	MGP_WTSI_10_80946616	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238851613					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381036808	MGP_WTSI_10_80946616	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81319705 () rs orientation: forward

Symbol	Name	Function Class
Celf5	CUGBP, Elav-like family member 5	1162 bp upstream
Cpgi1992	CpG island 1992	770 bp distal
Rr435679	regulatory region 435679	1198 bp distal
Rr435680	regulatory region 435680	672 bp distal
Rr435681	regulatory region 435681	132 bp proximal
Rr435682	regulatory region 435682	585 bp proximal
Rr435683	regulatory region 435683	1127 bp proximal
Tssr98622	transcription start site region 98622	1758 bp upstream
Tssr98623	transcription start site region 98623	1721 bp upstream
Tssr98624	transcription start site region 98624	1518 bp upstream
Tssr98625	transcription start site region 98625	1227 bp upstream
Tssr98626	transcription start site region 98626	1218 bp upstream
Tssr98627	transcription start site region 98627	1146 bp upstream