rs238854279 SNP Detail

Summary

• ID
  rs238854279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167432396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGGTCT ACAGAGTGAG
  TTCCAGGACA GCCAGGGCTA CACAGAGAAA CCCTGTCCCG AAAAGGAAAA AAAAAAAAAA
  AAAAAAAAGA GGACAGGTGC CATCTATTCT GCTCAGAATA GTTGGTAACA AAGTGACAAG
  CAGGGTCCTG CCCAAGGCCA AGAGTTTCTA GTCCTTGGAA ACGACCACTG TCAGAGAAGG
  Y
  GCAGAGAGAG GCGCCTCATA CTGGTGAGGC TGTCAGAAAG GGTCTCTGGC AGAAGCTGGG
  ACTGACCCAA CTACCCCACC CCCAGCTGTC ATAACTGTGG GCAGCTGGAG TTGCCAAACC
  CCACCACAGC TGCGTCACCA AGGGCCAGGA GGATCCAAGG CAGAGGGGGA CTGGGCAGGG
  CCCACACCCA AGCTGGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356508151	MGP_WTSI_2_167415976	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238854279					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356508151	MGP_WTSI_2_167415976	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167432396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12749	CpG island 12749	1292 bp distal
Gm11475	predicted gene 11475	919 bp upstream
Gm11476	predicted gene 11476	within coordinates
Gm31619	predicted gene, 31619	1013 bp upstream
Rr397510	regulatory region 397510	832 bp downstream
Rr570648	regulatory region 570648	1071 bp distal
Rr570649	regulatory region 570649	682 bp distal
Rr570650	regulatory region 570650	1017 bp distal
Rr570651	regulatory region 570651	within coordinates
Rr570652	regulatory region 570652	853 bp proximal
Tssr769	transcription start site region 769	1475 bp downstream
Tssr21821	transcription start site region 21821	1374 bp downstream
Tssr21822	transcription start site region 21822	917 bp downstream
Tssr21823	transcription start site region 21823	860 bp downstream
Tssr21824	transcription start site region 21824	262 bp upstream
Tssr27780	transcription start site region 27780	1019 bp upstream
Tssr27781	transcription start site region 27781	41 bp downstream