rs238857942 SNP Detail

Summary

• ID
  rs238857942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47920679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGTGCTG GGATTAAAGG
  CGTGCGCCAC CACTGCCCTG CTTGGACGCA ATCTTACTAG AGTTAGATAC TAGTATTCAA
  CTTGGAGATG TCAGGTAGAC CACTGGATAT AAAGATGTGA GCTTTCTTGG ACGAACTCTG
  AGGGAGAAAA AACTGGAAGT AGCTGTCAAA CAAATGGCCT CAAAGTGAAA TTCCCTGACG
  R
  CACCACAGAA GGACCGTCAA ACCTTGTCTT GGTCACCCAG CAAGTTCAAG TCCAGCCTGA
  ACAACTTAAC GAGACTCAGT CTCAGAGTTA AAAAAAAAAA GTTATTTTAA GGGCAGGTGT
  GGTGTCACCC ACCTATCATG CCACCACATG GAAAACAGAG GCAAGATCAG GAGTTCAAGG
  TCAGCCTCCC CTACAGCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398350528	MGP_WTSI_17_47746703	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238857942					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398350528	MGP_WTSI_17_47746703	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47920679 () rs orientation: forward

Symbol	Name	Function Class
Bysl	bystin-like	within coordinates
Cpgi9265	CpG island 9265	1046 bp proximal
Gm20517	predicted gene 20517	1835 bp upstream
Med20	mediator complex subunit 20	1831 bp upstream
Rr331712	regulatory region 331712	122 bp proximal
Rr339937	regulatory region 339937	within coordinates
Rr405326	regulatory region 405326	1615 bp upstream
Tssr5145	transcription start site region 5145	1492 bp downstream
Tssr144986	transcription start site region 144986	1803 bp upstream
Tssr144987	transcription start site region 144987	1816 bp upstream
Tssr144988	transcription start site region 144988	1869 bp upstream
Tssr148446	transcription start site region 148446	1420 bp downstream
Tssr148447	transcription start site region 148447	1457 bp downstream
Tssr148448	transcription start site region 148448	1669 bp downstream
Tssr148449	transcription start site region 148449	1695 bp downstream