rs238858699 SNP Detail

Summary

• ID
  rs238858699
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101898607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCGGAA GGAGGCGAAT
  GTGGTCGACA CTATGGCGAA TGTGGAAGAC AGTATGGGGA GTTCAGGTGA GGGAGAAGAC
  GTTAAGAGCT CTCAATCATT ACCGAAAGCC AGTACTCCAG CTGCCTCTCA AAGTCATGGA
  AGTTGTCAGT GACTATCGGT ATAGTGGCCC TTTCCTTCCT CAGTTTATCC TCAAAATAAA
  M
  AAGGCCAGAT TGAGTCTGAT AGACACAACA GACGTGTTCA CTAAATACCC GCTGTTGTAT
  GGGACAGGAA TAAAGAGGTT GGCTCAGAAA AATACAGAGA GGGAATGGGG ATTCCCCCAC
  CGAGTCCTCA GCAGCAACAG TGTAGCAGCT ATGGACTGGC TCCGACCTTC CCGGGTGAGA
  CTTCAGAGGC CTCAGACACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353651	CHEV_7_109397914	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238858699					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101898607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	242 bp proximal
Rhog	ras homolog family member G	within coordinates
Rr652561	regulatory region 652561	1869 bp distal
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	678 bp proximal
Rr652564	regulatory region 652564	1521 bp proximal
Tssr2354	transcription start site region 2354	859 bp upstream
Tssr68327	transcription start site region 68327	1642 bp downstream
Tssr68328	transcription start site region 68328	220 bp upstream
Tssr68329	transcription start site region 68329	302 bp upstream
Tssr68330	transcription start site region 68330	820 bp upstream
Tssr73939	transcription start site region 73939	26 bp upstream
Tssr73940	transcription start site region 73940	12 bp downstream
Tssr73941	transcription start site region 73941	54 bp downstream
Tssr73942	transcription start site region 73942	142 bp downstream
Tssr73943	transcription start site region 73943	675 bp downstream
Tssr73944	transcription start site region 73944	686 bp downstream
Tssr73945	transcription start site region 73945	727 bp downstream
Tssr73946	transcription start site region 73946	923 bp downstream
Tssr73947	transcription start site region 73947	1066 bp downstream
Tssr73948	transcription start site region 73948	1091 bp downstream
Tssr73949	transcription start site region 73949	1127 bp downstream
Tssr73950	transcription start site region 73950	1176 bp downstream