rs238859214 SNP Detail

Summary

• ID
  rs238859214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118785597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAATCAAT GTAATGAGCA
  TATTTGTCAC TTTAAGCATG TGTCATTTCT TTTGGGGGAG TGCACCCACA ATTTTCTCTT
  GAGGCCAGGA ATGTAGCTTA GTTGCCAGAG TGCTTGCCTA GTGGGCATGA AGCTCTGTTT
  TGAACCAGTG CCATACAAGA CCTAGCCCCT TAGTTCAAGT CTTTAGTCCT AGTACTTGGG
  R
  AGTGAGGATA GGAGGATCGG AAATACAGAG ACGTCCTTGG CCACATAAAT CCTTTCTTAT
  GATGATTTTG AATGTGACCA CCCTTCCTGT AAAAAATTTA AAATACAAAA CAAAACCTCG
  TGAGCTAAGT AAAGCAACCT CTAATCGCTG CAAAGGCTCA AAACGTTAAT TGCTGTAAAC
  CTATAGACGG GATTGACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372909564	MGP_WTSI_7_126329888	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238859214					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372909564	MGP_WTSI_7_126329888	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118785597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	1581 bp distal
Cpgi19632	CpG island 19632	815 bp distal
Gm73654	predicted gene, 73654	166 bp downstream
Gpr139	G protein-coupled receptor 139	1836 bp upstream
Rr381384	regulatory region 381384	within coordinates
Rr654600	regulatory region 654600	1452 bp distal
Rr654601	regulatory region 654601	311 bp distal
Rr654602	regulatory region 654602	within coordinates
Rr654603	regulatory region 654603	193 bp proximal
Tssr74477	transcription start site region 74477	1828 bp upstream
Tssr74478	transcription start site region 74478	1802 bp upstream
Tssr74479	transcription start site region 74479	1755 bp upstream