rs238859398 SNP Detail

Summary

• ID
  rs238859398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157120030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTAAAAGTA ACATTTCACA GAATAATAAT AAAGAGTAAA
  TAAGATAACA TATGTAGGGT GCTCAGTACT CTTTCTGCCT ATATTGTGAG CTCGGTAATC
  R
  GAGCTACACA TTAGTTCTGG CTTCCATTTT TGAGTCTGTT AAATTTGCAG ACCAGCGCAT
  CCCTCAACCC TTCCTGGAGT AGACAGCAAT TAACACGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585259	CHEV_2_157103846	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238859398					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157120030 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12571	CpG island 12571			711 bp proximal
Mroh8	maestro heat-like repeat family member 8			Intron
				Noncoding-Transcript-Variant
Rpn2	ribophorin II			988 bp upstream
Rr397441	regulatory region 397441			638 bp upstream
Rr568459	regulatory region 568459			459 bp proximal
Rr568460	regulatory region 568460			1429 bp proximal
Tssr21228	transcription start site region 21228			888 bp upstream
Tssr21229	transcription start site region 21229			916 bp upstream
Tssr21230	transcription start site region 21230			955 bp upstream
Tssr21231	transcription start site region 21231			1168 bp upstream
Tssr27165	transcription start site region 27165			1402 bp downstream
Tssr27166	transcription start site region 27166			1409 bp downstream
Tssr27167	transcription start site region 27167			1446 bp downstream