rs238859784 SNP Detail

Summary

• ID
  rs238859784
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116509854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGAGTGA AGGCTGCATT
  TGGGAAATTT CCAATCATAA TCATCGTCAT CCTCAGAATA TATGGTCAAT TTGATCTCTG
  AGTCAAATTG TGTGTGTGTG TGTATGTGTG TGTGTGTGTT TACAATCAAA GTGCAATATG
  TTTTGTGTCA ACAATATGGA GTGGCCAACA GAAATGAAAC AAAAGAATTA CAGCCAAGCT
  M
  GAGGTGACTT TAAGCTAGGG AACGGGCTTC AACATGGGGA CCAGCCTTCA TCAGTCTCAC
  TACTCTGACT GTCCTGGAAC TCACTATTGT AGACCAGGTT GGCCTCCAAA TCATAGTAAT
  CTGTCTGGCT CTGACTCCCA AATGCTAAAA TTAAAGACGT GCACTCAGCT CTTTTTCTTT
  TCTTTTTAAA AAATTATTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277678	CHEV_4_116325262	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238859784					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116509854 () rs orientation: forward

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	983 bp upstream
Cpgi14637	CpG island 14637	950 bp distal
Rr597944	regulatory region 597944	988 bp distal
Rr597945	regulatory region 597945	970 bp distal
Rr597946	regulatory region 597946	487 bp distal
Tssr38539	transcription start site region 38539	1122 bp downstream
Tssr42909	transcription start site region 42909	1248 bp upstream
Tssr42910	transcription start site region 42910	1231 bp upstream
Tssr42911	transcription start site region 42911	1211 bp upstream
Tssr42912	transcription start site region 42912	1108 bp upstream
Tssr42913	transcription start site region 42913	1086 bp upstream
Tssr42914	transcription start site region 42914	1021 bp upstream
Tssr42915	transcription start site region 42915	992 bp upstream
Tssr42916	transcription start site region 42916	975 bp upstream