rs238866515 SNP Detail

Summary

• ID
  rs238866515
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80971455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCGCCAA CCCCTTCCCC
  GCGCTACGCC CCTGGCACAG CCGGGTGGAG GCGACTGTTT TATGTAATCG CGGGGCGGCA
  GGTTTGCTGG CTGGCTGCAC CGGTGAGGGC GGGACCCCCG AGCTCAGCTG ACATTTCGCG
  GCCCTGCAAG TCTTCCCCTG GGGGGTCCCT GGTATGGCTT TGGTAATTTA AGGCGCAGAT
  K
  GGGGCGGGGG TGGACGGAGA CCCGACACTC TAAAGCAACC TAGCTGTACT TGCAAACTCT
  GGGTTCCTCG CAGTTTGAGT AAACTGAGGT TTATGTGGGG GTTAGGGGAC CTGGAGCTCA
  AATGCAGACT CTGATCTTTT TTCTTCCTTT CCTGGGTTCT TTGCACTACT TGGGTAAACT
  GAGGCCAAGG ATGACAGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381031529	MGP_WTSI_10_80598366	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238866515					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381031529	MGP_WTSI_10_80598366	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80971455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1942	CpG island 1942	1135 bp distal
Cpgi1943	CpG island 1943	within coordinates
Rr402073	regulatory region 402073	1612 bp upstream
Rr435527	regulatory region 435527	841 bp distal
Rr435528	regulatory region 435528	160 bp proximal
Rr435529	regulatory region 435529	1842 bp proximal
Tssr94677	transcription start site region 94677	1126 bp downstream
Tssr94678	transcription start site region 94678	330 bp downstream
Tssr94679	transcription start site region 94679	130 bp downstream
Tssr94680	transcription start site region 94680	602 bp upstream
Tssr94681	transcription start site region 94681	710 bp upstream
Tssr94682	transcription start site region 94682	882 bp upstream
Tssr94683	transcription start site region 94683	913 bp upstream
Tssr98562	transcription start site region 98562	1202 bp upstream
Zbtb7a	zinc finger and BTB domain containing 7a	within coordinates