rs238867549 SNP Detail

Summary

• ID
  rs238867549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34689234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAATAAT GTTTCTCTAA
  AAAAATGTAA AAAATCAGGC ATTTAGTTAA TGTTTGCCTA TTAACTTTCC ATTTCACAAA
  TAAATAATGC ATTTTTCTAT GATGGTGAGG ATGGATGATG ACAGGGAGGC TGAGGGTGGG
  GAGGAGGGTG GGGAGGAGGG GGAGGAGGAG GATGTGTATG GTATGATTGC AGGCATGTGC
  R
  TGCCGTGGTG TGAATGTGGA AGAGAGAGGA AAACCCCTGG TATTAATTCT CTCCTTTTAT
  GGCAGGTTCT GGGGAGTGAA CTTATCAGCT TGCATGGCAA AAATTAATCA AGAACAGAAT
  AAACTTAAGA ATCCTTTACA AAGTGGGAAA ACCTGTGACA TGCTGAGACT GAGCTGAAGA
  GAAATGCACA CGACTGGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361143826	MGP_WTSI_4_34636483	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238867549					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361143826	MGP_WTSI_4_34636483	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34689234 () rs orientation: forward

Symbol	Name	Function Class
Cfap206	cilia and flagella associated protein 206	within coordinates
Cpgi14121	CpG island 14121	1661 bp distal
Rr100808	regulatory region 100808	1033 bp distal
Rr398199	regulatory region 398199	1710 bp downstream
Slc35a1	solute carrier family 35 (CMP-sialic acid transporter), member 1	1796 bp upstream
Tssr41193	transcription start site region 41193	1925 bp upstream
Tssr41194	transcription start site region 41194	1892 bp upstream
Tssr41195	transcription start site region 41195	1859 bp upstream
Tssr41196	transcription start site region 41196	1782 bp upstream
Tssr41197	transcription start site region 41197	1770 bp upstream