rs238869249 SNP Detail

Summary

• ID
  rs238869249
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38529629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATTTTGT AGAAGTGTTT
  AGGCCTATTT TTTTTTCCCA CCGAGAGACC TCCATTTTGT TAGACCACGT ATTAGAGACT
  TCAGTAAATA TTGGCAAATT TTACCTGTGC TGAAAACAGA ATCATTTTGG ATATTTGATG
  CCCACTGAAT TAGAATTGAA GGAAAGGGCT TTTAAAAATA CAGTTAGATT AGAATCCTTA
  K
  AAAGAGTTAT TTACGTGTTT GTTTCTAAAA ATGATGAAAT GTTGCTTTTG GGGGATAATT
  AACAATGTAC TTTCAAATTA AAGTTCAGCA CTTTCTTAAA AAAAAAAAAA AACAAGTCCA
  AATCCTGACT TGTAAAAACT CGTTTAGGCA AGTTTTTTAG CGATTTAAAT GCTTTTTTTT
  TTTTTTTTTT TTTTTTTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368010460	MGP_WTSI_6_38502694	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238869249					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368010460	MGP_WTSI_6_38502694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38529629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17313	CpG island 17313	379 bp distal
Gm56952	predicted gene, 56952	1404 bp downstream
Gm67915	predicted gene, 67915	1441 bp upstream
Luc7l2	LUC7-like 2 (S. cerevisiae)	within coordinates
Rr399618	regulatory region 399618	482 bp downstream
Rr628836	regulatory region 628836	1921 bp distal
Rr628837	regulatory region 628837	1452 bp distal
Rr628838	regulatory region 628838	1772 bp distal
Rr628839	regulatory region 628839	881 bp distal
Rr628840	regulatory region 628840	within coordinates
Tssr55654	transcription start site region 55654	1887 bp downstream
Tssr55655	transcription start site region 55655	1201 bp downstream
Tssr55656	transcription start site region 55656	1158 bp downstream
Tssr55657	transcription start site region 55657	1144 bp downstream
Tssr55658	transcription start site region 55658	1125 bp downstream
Tssr55659	transcription start site region 55659	843 bp downstream
Tssr55660	transcription start site region 55660	198 bp upstream
Tssr60415	transcription start site region 60415	1438 bp upstream
Tssr60416	transcription start site region 60416	667 bp upstream