rs238872974 SNP Detail

Summary

• ID
  rs238872974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146790137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAGATCTA ACCATTATGA ACCACATGCG
  TTTCCAAAGC ATGTGTGCTT AGGAACAGCA GAGGCAGCAT ACATGCATGT GCATATGcac
  acacacacac acacacacac acacacacac acacacacac atatacacac acacatacac
  R
  cacacacaca cagagttata cacacagaat cacacacaca cactaccaca ccatacacac
  tctcaaacac acacacacaa acacagagag ggagagacac agagagagag agacagagag
  agagacgaga gaggagagag agagagagag                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321011258	CHEV_3_146747346	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238872974					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146790137 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	768 bp upstream
Rr587119	regulatory region 587119	1465 bp distal
Rr587120	regulatory region 587120	594 bp distal
Rr587121	regulatory region 587121	627 bp proximal