rs238874935 SNP Detail

Summary

• ID
  rs238874935
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79754313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATC TTTTCATTTT TTTTTTTTTT
  W
  AAAAAGATTT ATTTCCATTA GGCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
ss641939439	FVB_NJ_8_81551583	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
rs238874935					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss641939439	FVB_NJ_8_81551583	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79754313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	218 bp proximal
Cpgi20620	CpG island 20620	1003 bp proximal
Rr186908	regulatory region 186908	within coordinates
Rr400985	regulatory region 400985	622 bp upstream
Tssr2612	transcription start site region 2612	667 bp upstream
Tssr78123	transcription start site region 78123	285 bp upstream
Tssr78124	transcription start site region 78124	494 bp upstream
Tssr78125	transcription start site region 78125	569 bp upstream
Tssr78126	transcription start site region 78126	633 bp upstream
Tssr78127	transcription start site region 78127	881 bp upstream
Tssr78128	transcription start site region 78128	945 bp upstream
Zfp827	zinc finger protein 827	753 bp upstream