rs238876251 SNP Detail

Summary

• ID
  rs238876251
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57275830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttcttact tgatcttccc ttgctatctt
  aatctctgga acactactgt atactgaaag tacacaattt ttcattttat gggggctcaT
  TTTTTTCTTt tttgtttttt tgagacagtt tctctgtagc cctggctgtc ctggaactca
  S
  tttgtagacc aggctggcct tgagcccaga aatccgcctg cctctgcctc ccaagtgctg
  gattaaaggt gtgtgccacc actgccctgc tAGGGCTCAT TGTTTAGAAG TTAGTGTGGC
  CTCttttttg gaaacttttg ctatgtatcc                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324050318	CHEV_12_58330031	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238876251					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57275830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	1005 bp proximal
Gm40426	predicted gene, 40426	1402 bp downstream
Mipol1	mirror-image polydactyly 1	1383 bp upstream
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	1368 bp upstream
Rr265473	regulatory region 265473	770 bp proximal
Rr403305	regulatory region 403305	1333 bp upstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113518	transcription start site region 113518	1162 bp downstream
Tssr113519	transcription start site region 113519	1362 bp upstream
Tssr113520	transcription start site region 113520	1421 bp upstream
Tssr113521	transcription start site region 113521	1470 bp upstream