rs238877095 SNP Detail

Summary

• ID
  rs238877095
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66056313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGGGAG AAGTCAAAGC
  AGATTTATTT TCACGGGATC TGATTGTATA CATAAATGAC CCTAAAAACT CACCAGGAAA
  TTCTACAGCT GACCAACACG TTCAACAAAA TATCAGGATT ACAAAATTAA CAGACAAAAA
  AAAAATCAAA AGCTTTCCTA TAGACAAACA ACAAATGAAT TGATAAAGAA ATCAGAAAGC
  A
  ATACCTTTCA AAGGGACTGA GGAAAAAAAA AATCTCGAGG TAACTCTAAC TAAGCAAATA
  GGAAACTTCT ATAATAAAAG CCGTAAGACA CTGGAAGAAC GAAATTGGAG AGAAGATGGA
  AAGAGCTCTC GTGGTTAAGG ACGTAATATA GTGGGAATGG CCATCCTACC AAGTGCGAGC
  TACAGATTCA GTGCAATCCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658632	CHEV_18_66082896	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238877095					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66056313 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	874 bp downstream
Gm50119	predicted gene, 50119	814 bp downstream
Gm58551	predicted gene, 58551	1559 bp upstream
Rr346799	regulatory region 346799	713 bp distal
Rr346800	regulatory region 346800	1088 bp proximal
Rr353052	regulatory region 353052	912 bp distal
Rr353053	regulatory region 353053	1487 bp proximal
Rr393825	regulatory region 393825	971 bp upstream