rs238877229 SNP Detail

Summary

• ID
  rs238877229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:121070210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTGAAGC CGCTGGCTGA
  CTTCTTCTGC ACATGAGATC TGACTCCTAG CATCGTTTGC ACCCTGGAGA CCAGGAAAGA
  CCATACTGCA ATGTGCTATG TGTCCATGTC AAGAGGTCTC TGGTTTTGTG CCTTTTTGCC
  CCATGATAGA AGTTGTTCTG TTTCAGAACA AGTGAGACGT CAAAATAAGA AAAGGGGTGG
  R
  TCTCACTGCA GATACTTCAG TCTTTAAGAG AAGAAATGGT TCCCTGTGGT TAGCAAAAGA
  GCAGAGCTCA GACTACCTCT GTTCAGAGCC TGAAGCACAA AGTTCTCCAG GGAGAAGAGG
  AGACCACACA GCCAACCCCA GGGTCTTCTT ACCTCCTGGA ATGGCCACTC TTCTGGATAG
  CTTTATGTCA ACTTGACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324851452	CHEV_14_121232020	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238877229					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:121070210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6879	CpG island 6879	647 bp distal
Rr287003	regulatory region 287003	810 bp distal
Rr287004	regulatory region 287004	1391 bp proximal
Rr390218	regulatory region 390218	411 bp downstream
Rr404289	regulatory region 404289	698 bp downstream