rs238878552 SNP Detail

Summary

• ID
  rs238878552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31466980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccctcccgc ccctctttac agagaaagac
  ggtacaaaag gtggttcccc ctcccaaccc ttactaagaa gggcaaaggt cagctataga
  caacttgaac ctttgtagac ctacctagaa aggaccagag aaacctCATT ATACAATGTC
  Y
  CCAGGCCttc taaaacaggg tctcatatga cccagttgtc cccaaactag ctatatagct
  gagggtgact ttgaatacaa gagccccctg cctccacatc tcaagtgttg caactgaagg
  gatgaagcag tagacatggc tattaactag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324914043	CHEV_15_31396589	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238878552					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31466980 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	1073 bp downstream
Tssr133931	transcription start site region 133931	1104 bp downstream
Tssr133932	transcription start site region 133932	1137 bp downstream