rs238881409 SNP Detail

Summary

• ID
  rs238881409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90173759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATGTGTG TCCAGAGGCC
  AGGTTGAGAA GACAGTCGGT TTGGCTCTAG TTCTCTGAGG AAGAGCGGGA GGTTAAATAG
  ACTGTGCATC CTGGAGACAC TAAAAGCTTC CCTGCCTTGC ACAGGACCCT TAGTGGGAGG
  TCTGCGTTGG TCTGATGCTG TGCTGGCACC TTAAACAGTA CTATCCCCCC CGCCCCCCCA
  R
  CGATACCACA CACCCATAGG CTGACTTATG CTGAGCTAGC GACAGCTTCC CCTTCGCAGC
  CATTTCAGGA AGTAGCCTCC CTTCCCCTCT GAAGCACTCT CTCAGCCTCT AGCCCCTTGC
  AAGCTACCCG CCAGGCTTCT TCCCACCTTC AGCACCCTGG GGCACCTCAG GACTCTTGGG
  GCTTCCACTC CCCAGGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358829471	MGP_WTSI_3_90070374	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238881409					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358829471	MGP_WTSI_3_90070374	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90173759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13456	CpG island 13456	257 bp distal
Dennd4b	DENN domain containing 4B	within coordinates
Gm65083	predicted gene, 65083	56 bp upstream
Rr397807	regulatory region 397807	1375 bp downstream
Rr580320	regulatory region 580320	1257 bp distal
Rr580321	regulatory region 580321	1333 bp distal
Rr580322	regulatory region 580322	67 bp distal
Rr580323	regulatory region 580323	1035 bp distal
Rr580324	regulatory region 580324	within coordinates
Rr580325	regulatory region 580325	73 bp proximal
Tssr30184	transcription start site region 30184	1464 bp downstream
Tssr30185	transcription start site region 30185	514 bp downstream
Tssr30186	transcription start site region 30186	485 bp downstream
Tssr30187	transcription start site region 30187	40 bp upstream
Tssr30188	transcription start site region 30188	55 bp upstream
Tssr34202	transcription start site region 34202	877 bp upstream
Tssr34203	transcription start site region 34203	55 bp upstream