rs238886423 SNP Detail

Summary

• ID
  rs238886423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97116418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGCTGG GGGGTGTTTT
  AAAAGCTCTT TATGCCCTTG ACTTCACTGT CTGGATCATC TCAGAGTTTC CACCTGTAGA
  GCGTGTATCC TCTGAGAATT GATCACACTG TCTTCATCCT TTGAATATCA GGTACTTTTA
  AATTGAATTT TAGGCATTTT GGGCATCACA TTATAAGTCT TTTGGTCTTC TTATCTACCA
  Y
  GGGGAATGTT GATTTATATT ATTAGCAGGT AATCAGCCTC ATTAGGTTCA AAGTTTTCCC
  TTGACATTTG CAGATGGTGG TTGCAATGGA AGCCTAGCTT CTGAAGCCTT CACATTGCCC
  CGTGGGTCAG TTTCTTGTGG GTAGCACTCC AAGACAGGAC AACGGATGAC ATTTTAACCT
  GGATCCCTCA GTCTTCATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323117127	CHEV_9_97134784	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238886423					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97116418 () rs orientation: forward

Symbol	Name	Function Class
Gm29240	predicted gene 29240	265 bp upstream
Rr383804	regulatory region 383804	1251 bp upstream
Tssr2982	transcription start site region 2982	192 bp upstream