rs238887519 SNP Detail

Summary

• ID
  rs238887519
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30174257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACGATCGT GTTCAAGGAA
  GGAGGCTAGC AGGCTCCGGC GCCGAGACCC GGGGGCTCGA CGGAGTGCAG AGATAATGAC
  TCCGGGAGGG TTTTACCGCC CCCAGCGCCC CGCCCGCCCC CCGCGCCGCG CCATTGGCTC
  AGGTGCTGTG GGGCGGGGGA GGGACGGGAG GCGGACCGAA GATGATTCAC CTTGAATGTT
  S
  CTCCGGTTGG TGCGCGTCGT AGGGCACGCC CGACCGGGAC TGCGGATACG TCGCGAGCCC
  CGCCTGTTCG CCGAACCCAG CTGGGTTTGG CCCCTAAGGG GTCCCGCTGC CCACTCGCTG
  TTCTAGCCTC CTACCTTGGG CTGGGGTGCC GCCGGCCGAG GTGTGCCCCG ATGCCCTACC
  ATCCCACCTC CCTCTGAACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367828168	MGP_WTSI_6_30124258	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238887519					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367828168	MGP_WTSI_6_30124258	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30174257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	within coordinates
Mirc35hg	microRNA cluster 35, host gene	133 bp upstream
Rncr4	retina expressed non-coding RNA 4	within coordinates
Rr146074	regulatory region 146074	within coordinates
Tssr55327	transcription start site region 55327	1388 bp downstream
Tssr55328	transcription start site region 55328	999 bp upstream
Tssr55329	transcription start site region 55329	1019 bp upstream
Tssr55330	transcription start site region 55330	1067 bp upstream
Tssr55331	transcription start site region 55331	1099 bp upstream
Tssr55332	transcription start site region 55332	1122 bp upstream
Tssr55333	transcription start site region 55333	1557 bp upstream
Tssr60107	transcription start site region 60107	179 bp upstream
Tssr60108	transcription start site region 60108	149 bp upstream
Tssr60109	transcription start site region 60109	122 bp upstream
Tssr60110	transcription start site region 60110	470 bp downstream
Tssr60111	transcription start site region 60111	1475 bp downstream