rs238894658 SNP Detail

Summary

• ID
  rs238894658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8970454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAAAAAA CCAAGTGTTT
  TCTGCTCTTT CAGATGCCTA GAGTTCAGTT CCCAGGACCC ACATCAGGCA GCCTGCAATT
  TCAGCTCCAG GGGGATCTTA TGTCTGCTTC TGGCTTCCTC TAGCGACTGC TACACATGTA
  GCGTTTTTTC ACTCACACAC ATATTCTAGG AACCTTAAAG ACCCACAAAT CCTGCATCCC
  Y
  CTCATTTGCT TCCTCATACA CTAGGCTAGC TGGCCAGAGA GCTTGCAGGG ATGTCTCCTC
  ACTCAAGACA TCTGTCTGGC TGTAACAGCT GGGTTTTACA GAAAGGTAAA GCCACAGCGT
  CTGGTTTTCC ATGAATCCTC ACGATTGCTT TGCAAGCACT TTACCCACTT ACCACCTCTT
  CATATATACT ATATTTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323886803	CHEV_12_8927260	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238894658					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8970454 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	944 bp proximal
Gm60663	predicted gene, 60663	within coordinates
Laptm4a	lysosomal-associated protein transmembrane 4A	1618 bp upstream
Rr403227	regulatory region 403227	1351 bp upstream
Rr462715	regulatory region 462715	654 bp proximal
Rr462716	regulatory region 462716	1155 bp proximal
Rr462717	regulatory region 462717	1292 bp proximal
Rr462718	regulatory region 462718	1395 bp proximal
Tssr112751	transcription start site region 112751	1144 bp upstream
Tssr112752	transcription start site region 112752	1233 bp upstream
Tssr112753	transcription start site region 112753	1253 bp upstream
Tssr112754	transcription start site region 112754	1563 bp upstream
Tssr112755	transcription start site region 112755	1588 bp upstream
Tssr112756	transcription start site region 112756	1607 bp upstream
Tssr115725	transcription start site region 115725	1390 bp downstream