rs238896669 SNP Detail

Summary

• ID
  rs238896669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:31426991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCCTCC CCCACACTCC
  CAGGTCCTCC TCCCAAGTGC TTCCCAAGCA CACAGCAGAT CCCAGTGATG AACTTCGGCC
  CAGACCGCAC TGTGGAAGCC GGTGGGTTTG GAAGCCACTG CTGTGGGTCG GCAAGGAGAA
  TTCAAGCCCC GAACATTGTG CAAACAGGAT ATTCACTTGT GTCAGAGAGA TCAAAAAAGG
  Y
  TTGAGGTTTT TCTTCACAGC CTCAGCCTGC CTCCCTCTCC TCTCTCACTT TATCTAGTCC
  TTGCAGTGAG CAGGCGCCTC TTGTACAGCA AGCAGGAAGA CATGGCTGCG GGGGAGACAC
  AGCTCTATGC CAAGGTCTCC AACAAGCTCA AGGGCCGCAG CACCCCCTCA CTCCTGGATC
  CCCTCCTGGC CATGGGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325358919	CHEV_17_31344962	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238896669					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31426991 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr370214	regulatory region 370214			within coordinates
Rr525399	regulatory region 525399			1596 bp distal
Rr525400	regulatory region 525400			within coordinates
Tssr143654	transcription start site region 143654			32 bp upstream
Tssr147277	transcription start site region 147277			780 bp downstream
Tssr147278	transcription start site region 147278			796 bp downstream
Ubash3a	ubiquitin associated and SH3 domain containing, A			mRNA-UTR
				Noncoding-Transcript-Variant